nf-core/denovotranscript
A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
denovo-assemblyrna-seqtranscriptome
Version history
What’s Changed
- bump version to 1.2.0dev by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/25
- AWS full test manual dispatch by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/26
- Update spades resources and usage instructions by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/27
- Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/28
- Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in https://github.com/nf-core/denovotranscript/pull/29
- Fix ch_transcripts and ch_pubids for AWS by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/30
- Fix transrate dependencies issue by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/32
- Bump to version 1.2.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/33
- Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/36
- Release version 1.2.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/34
New Contributors
- @mirpedrol made their first contribution in https://github.com/nf-core/denovotranscript/pull/29
Full Changelog: https://github.com/nf-core/denovotranscript/compare/1.1.0…1.2.0
What’s Changed
- Post-release DOI and changelog update by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/10
- Post-release DOI and chagelog update by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/11
- Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/denovotranscript/pull/14
- Fix skip_assembly by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/15
- Increase trinity resources by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/16
- bump pipeline version to 1.1.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/17
- Fix Salmon quantification for skip_assembly mode by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/21
- Update Trinity module and fix dependency issue by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/24
- Release version 1.1.0 by @avani-bhojwani in https://github.com/nf-core/denovotranscript/pull/18
New Contributors
- @nf-core-bot made their first contribution in https://github.com/nf-core/denovotranscript/pull/14
Full Changelog: https://github.com/nf-core/denovotranscript/compare/1.0.0…1.1.0
[1.0.0] - 2024-08-15
Initial release of nf-core/denovotranscript, a pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq.